The migration crisis in Europe that coincided with a wave of terrorist attacks attributed to ISIS has exacerbated the dilemma between the desire of states to secure their territory and the European tradition of open borders and inclusion. European states have redefined both their migration policies and security measures in a climate of crisis and emergency that does not accurately reflect either the issues that have contributed to the current instability or the long-term nature of the terrorist threat. Instead, a systematic conflation is created between terrorism and migration by a number of states in the Mediterranean region. The aim here is to identify this conflation and show how it is manifested in the juxtaposition of exclusion and crisis narratives and the adoption of legal measures that overlap both security and migration. The article introduces preliminary findings on the topic and forms the basis for further research that might provide answers for states and for the EU as an organization that will address security agendas and migration policies within the framework of the European human rights tradition. Focusing on counterterrorism and migration measures and using policies and official statements by government officials, the article examines the links and influences between them.